IKKE Web Server

1. Algorithm Selection

Regular Enrichments Iterative k-mer Knockout Enrichments (IKKE)

k-mer length: Range: 1-12

Algorithm Parameters

Probabilistic Calculate enrichments without control file Shuffled Sequences Shuffle sequences preserving k-let count Bootstrap Randomly subsample sequences multiple times

2. File Upload

Test File *

Choose file...

Accepted formats: FASTA, FASTQ, TXT Control File

Choose file...

Accepted formats: FASTA, FASTQ, TXT

3. Visualization Parameters

Number of sequence logos: Number of PWM logos to generate Number of k-mers to display: Top k-mers shown in scatter plot Number of k-mers in PWM: K-mers used to build each logo